Info • Neurospora discreta FGSC9959 v1.0

Status

[May 2023] The Neurospora discreta FGSC9959 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 40.28
Sequencing read coverage depth 240x
# of contigs 8
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 3
Scaffold L50 (Mbp) 5.63
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.53, 5.90, 5.63


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 22974163 22723597 98.9%
Other IsoSeq_hq_reads_HPWAO 43366 42293 97.5%
Other RNAseq_contigs 33989 32763 96.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2049 1796
transcript 1874 1634
exon 717 441
intron 111 75
description:
protein length (aa) 516 428
exons per gene 2.61 2
# of gene models 9493


Collaborators

  • Michael Freitag, Department of Biochemistry & Biophysics, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.