Info • Nemania sp. FL0031 v2.0

Status

[November 2019] The Nemania sp. FL0031 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Nemania sp. FL0031 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.66
Sequencing read coverage depth 285.11x
# of contigs 211
# of scaffolds 211
# of scaffolds >= 2Kbp 210
Scaffold N50 32
Scaffold L50 (Mbp) 0.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.48, 1.34, 1.18


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 59139 57887 97.9%
Ests est.fasta 208090023 206004311 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 2051 1819
transcript 1850 1629
exon 581 363
intron 94 68
description:
protein length (aa) 487 409
exons per gene 3.18 3
# of gene models 13572


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.