Info • Nemania sp. FL0916 v1.0

Status

[June 2019] The Nemania sp. FL0916 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Nemania sp. FL0916 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.47
Sequencing read coverage depth 117.772569612245x
# of contigs 619
# of scaffolds 608
# of scaffolds >= 2Kbp 536
Scaffold N50 47
Scaffold L50 (Mbp) 0.27
# of gaps 11
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.17, 1.01, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53928 53256 98.8%
Ests est.fasta 174917212 173554359 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2105 1862
transcript 1908 1675
exon 612 381
intron 95 70
description:
protein length (aa) 500 415
exons per gene 3.12 3
# of gene models 11921


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.