Status
v.1.0 (June 2005): The assembly release version 1.0 of whole genome shotgun reads was constructed with the JGI assembler, Jazz, using paired end sequencing reads at a coverage of 8.2X. After trimming for vector and quality, 546, 767 reads assembled into 396 scaffolds totaling 52.4 MB. Roughly half of the genome is contained in 11 scaffolds all at least 1.21 MB in length.
The current draft release, version 1.0, includes a total of 16,237 gene models predicted and functionally annotated using the JGI annotation pipeline.
Collaborators
- US Department of Energy Joint Genome Institute
- Lab of Hans VanEtten ([email protected]) at The University of Arizona
- Lab of Sarah Covert ([email protected]) at The University of Georgia
- Lab of David Geiser ([email protected]) at Penn State
Genome Reference(s)
Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, Coutinho PM, Nelson DR, Straney D, Napoli CA, Barker BM, Gribskov M, Rep M, Kroken S, Molnár I, Rensing C, Kennell JC, Zamora J, Farman ML, Selker EU, Salamov A, Shapiro H, Pangilinan J, Lindquist E, Lamers C, Grigoriev IV, Geiser DM, Covert SF, Temporini E, Vanetten HD
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.
PLoS Genet. 2009 Aug;5(8):e1000618. doi: 10.1371/journal.pgen.1000618
Funding
This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program and the by the University of California, Lawrence Livermore National Laboratory under Contract No. W-7405-Eng-48, Lawrence Berkeley National Laboratory under contract No. DE-AC03-76SF00098 and Los Alamos National Laboratory under contract No. W-7405-ENG-36.
