Status
[October 2022] The Fusarium vanettenii 77-13-4 v3.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 54.59 |
| Sequencing read coverage depth | 83.81x |
| # of contigs | 21 |
| # of scaffolds | 21 |
| # of scaffolds >= 2Kbp | 21 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 3.91 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.56, 5.37, 4.92 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 85046744 | 84581369 | 99.5% |
| Other | IsoSeq_hq_reads | 83210 | 82454 | 99.1% |
| Other | RNAseq_contigs | 43069 | 42400 | 98.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1863 | 1627 |
| transcript | 1707 | 1484 |
| exon | 561 | 347 |
| intron | 79 | 56 |
| description: | ||
| protein length (aa) | 488 | 414 |
| exons per gene | 3.04 | 2 |
| # of gene models | 16929 |
Collaborators
- Michael Freitag, Department of Biochemistry & Biophysics, Oregon State University
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
