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Info • Nectriopsis sporangicola NRRL 22127 v1.0

Status

[September 2018] The Nectriopsis sporangicola NRRL 22127 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Nectriopsis sporangicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.48
Sequencing read coverage depth 396.64x
# of contigs 35
# of scaffolds 35
# of scaffolds >= 2Kbp 35
Scaffold N50 8
Scaffold L50 (Mbp) 1.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.46, 2.23, 1.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32955 31545 95.7%
Ests est.fasta 227577447 213562075 93.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1884 1619
transcript 1709 1470
exon 643 393
intron 108 76
description:
protein length (aa) 484 400
exons per gene 2.66 2
# of gene models 8044


Collaborators

Kerry O`Donnell, ARS-USDA, USA

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.