Status
[July 2022] The Neopestalotiopsis sp. LGMF1551 v1.0 genome was sequenced with PacBio, assembled with Flye (v2.9-b1768), and annotated with the JGI Fungal Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity (v2.8.5). Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 48.36 |
| Sequencing read coverage depth | 131.42x |
| # of contigs | 16 |
| # of scaffolds | 16 |
| # of scaffolds >= 2Kbp | 16 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 3.82 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.23, 5.33, 5.26 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 48083 | 45335 | 94.3% |
| Ests | est.fasta | 146034512 | 144884628 | 99.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2008 | 1752 |
| transcript | 1786 | 1556 |
| exon | 599 | 374 |
| intron | 114 | 77 |
| description: | ||
| protein length (aa) | 502 | 417 |
| exons per gene | 2.98 | 2 |
| # of gene models | 12019 |
Collaborators
- Chirlei Glienke, Universidade Federal do Paraná, PR, Brazil
- Francis M. Martin, INRAE, France
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Xylariales
- JGI EcoGroup Portal: Endophytic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
