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Info • Helotiales sp. P8C63 v1.0

Status

[January 2021] The Helotiales sp. P8C63 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Helotiales sp. P8C63 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.28
Sequencing read coverage depth 62.52x
# of contigs 27
# of scaffolds 27
# of scaffolds >= 2Kbp 26
Scaffold N50 8
Scaffold L50 (Mbp) 2.29
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.03, 3.46, 3.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38828 36294 93.5%
Ests est.fasta 167587139 165876226 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1804 1581
transcript 1638 1428
exon 545 344
intron 84 58
description:
protein length (aa) 468 386
exons per gene 3.01 3
# of gene models 12802


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.