Info • Neocallimastix cameroonii var. constans G3 v1.0

Status

[August 2022] The Neocallimastix constans G3 v1.0 genome was sequenced with PacBio, assembled with Flye and annotated with the JGI annotation pipeline.

Genome Assembly
Genome Assembly size (Mbp) 187.12
Sequencing read coverage depth 61.03x
# of contigs 558
# of scaffolds 558
# of scaffolds >= 2Kbp 556
Scaffold N50 83
Scaffold L50 (Mbp) 0.70
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.34, 2.31, 2.11


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44160 38403 87.0%
Ests est.fasta 453262342 423199772 93.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2445 1871
transcript 1676 1247
exon 365 150
intron 217 161
description:
protein length (aa) 522 372
exons per gene 4.59 3
# of gene models 23663


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mondo SJ, He G, Sharma A, Ciobanu D, Riley R, Andreopoulos WB, Lipzen A, Kuo A, LaButti K, Pangilinan J, Salamov A, Salamon H, Shu L, Gladden J, Magnuson J, Aime MC, O'Malley R, Grigoriev IV
Consecutive low-frequency shifts in A/T content denote nucleosome positions across microeukaryotes.
iScience. 2025 May 16;28(5):112472. doi: 10.1016/j.isci.2025.112472

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.