Status
The genome sequence and gene prediction of Neosartorya
fischeri were not determined by the JGI, but were downloaded
from the Aspergillus
Comparative Database on 31 Jul 2012. Please note that this copy
of the genome is not maintained by the Broad Institute and is
therefore not automatically updated. This copy of the genome does
not include the mitochondrial chromosome or genes. The JGI
Annotation Pipeline was used to add additional functional
annotation to the externally generated chromosomes and proteins.
Summary statistics for the Neosartorya fischeri NRRL 181
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 32.55 |
| Sequencing read coverage depth | 1 |
| # of contigs | 976 |
| # of scaffolds | 976 |
| # of scaffolds >= 2Kbp | 62 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 2.93 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.29, 4.68, 4.03 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1611 | 1365 |
| transcript | 1466 | 1224 |
| exon | 492 | 264 |
| intron | 75 | 61 |
| description: | ||
| protein length (aa) | 489 | 408 |
| exons per gene | 2.98 | 3 |
| # of gene models | 10406 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875
Lonial S, Williams L, Carrum G, Ostrowski M, McCarthy P Jr
Neosartorya fischeri: an invasive fungal pathogen in an allogeneic bone marrow transplant patient.
Bone Marrow Transplant. 1997 Apr;19(7):753-5. doi: 10.1038/sj.bmt.1700715
Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875
Lonial S, Williams L, Carrum G, Ostrowski M, McCarthy P Jr
Neosartorya fischeri: an invasive fungal pathogen in an allogeneic bone marrow transplant patient.
Bone Marrow Transplant. 1997 Apr;19(7):753-5. doi: 10.1038/sj.bmt.1700715
Funding
This project was not sequenced at the JGI.
