Info • Neofusicoccum parvum UCRNP2

Status

This genome was sequenced by Barbara Blanco-Ulate, Dario Cantu ([email protected]) et al. in Department of Viticulture and Enology, University of California-Davis, Davis, California, USA (Draft Genome Sequence of Neofusicoccum parvum Isolate UCR-NP2, a Fungal Vascular Pathogen Associated with Grapevine Cankers).

Summary statistics for the Neofusicoccum parvum Isolate UCR-NP2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.59
Sequencing read coverage depth 100x
# of contigs 1728
# of scaffolds 1297
# of scaffolds >= 2Kbp 984
Scaffold N50 149
Scaffold L50 (Mbp) 0.08
# of gaps 431
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.48, 0.35, 0.34


Gene Models ExternalModels
length (bp) of: average median
gene 1531 1294
transcript 1278 1080
exon 404 235
intron 119 63
description:
protein length (aa) 426 360
exons per gene 3.16 3
# of gene models 10366


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Blanco-Ulate B, Rolshausen P, Cantu D
Draft Genome Sequence of Neofusicoccum parvum Isolate UCR-NP2, a Fungal Vascular Pathogen Associated with Grapevine Cankers.
Genome Announc. 2013 Jun 13;1(3):. doi: 10.1128/genomeA.00339-13

Funding

This project was not sequenced at the JGI.