Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Neocallimastix californiae G1 v1.0

Status

[November 2015] The Neocallimastix californiae G1 genome was sequenced using the PacBio platform and assembled together with Falcon+FinisherSC.

Summary statistics for the Neocallimastix californiae G1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 193.03
Sequencing read coverage depth 20x
# of contigs 1819
# of scaffolds 1819
# of scaffolds >= 2Kbp 1801
Scaffold N50 134
Scaffold L50 (Mbp) 0.44
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.84, 1.45, 1.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 29649 25262 85.2%


Gene Models FilteredModels5
length (bp) of: average median
gene 2295 1761
transcript 1587 1200
exon 373 167
intron 220 169
description:
protein length (aa) 482 351
exons per gene 4.25 3
# of gene models 20219


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.