Status
This genome was sequenced by the Broad Institute. Please check their data use policies.
We updated the annotation of N. crassa genome based on up-to-date gene model from Broad Institute (Mar 22, 2013). The number of gene increase than previous model (9,907 -> 10,785)
Summary statistics for the Neurospora crassa OR74A v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 41.04 |
| Sequencing read coverage depth | >20x |
| # of contigs | 411 |
| # of scaffolds | 20 |
| # of scaffolds >= 2Kbp | 19 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 6.00 |
| # of gaps | 391 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 9.80, 6.44, 6.00 |
| Gene Models | BroadModels | |
| length (bp) of: | average | median |
| gene | 2482 | 2200 |
| transcript | 2266 | 1986 |
| exon | 794 | 499 |
| intron | 118 | 77 |
| description: | ||
| protein length (aa) | 522 | 430 |
| exons per gene | 2.86 | 3 |
| # of gene models | 10785 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B
The genome sequence of the filamentous fungus Neurospora crassa.
Nature. 2003 Apr 24;422(6934):859-68. doi: 10.1038/nature01554.
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B
The genome sequence of the filamentous fungus Neurospora crassa.
Nature. 2003 Apr 24;422(6934):859-68. doi: 10.1038/nature01554.
Funding
This project was not sequenced at the JGI.
