Info • Neurospora crassa clade B FGSC 4830 v1.0


[April 2018] The Neurospora crassa clade B FGSC 4830 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Neurospora crassa clade B FGSC 4830 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.06
Sequencing read coverage depth 50.68x
# of contigs 93
# of scaffolds 93
# of scaffolds >= 2Kbp 89
Scaffold N50 6
Scaffold L50 (Mbp) 2.34
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.65, 3.74, 3.69

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36225 35575 98.2%
Ests est.fasta 115157059 114525678 99.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1916 1672
transcript 1712 1468
exon 643 380
intron 124 78
protein length (aa) 482 394
exons per gene 2.66 2
# of gene models 10586


Pierre Gladieux, INRA, Montpellier

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.