Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Neurospora hispaniola FGSC 10403 v1.0

Status

[October 2017] The Neurospora hispaniola FGSC 10403 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Neurospora hispaniola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.81
Sequencing read coverage depth 128.45x
# of contigs 23
# of scaffolds 23
# of scaffolds >= 2Kbp 23
Scaffold N50 4
Scaffold L50 (Mbp) 4.34
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.57, 5.47, 5.23


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 26985 26693 98.9%
Ests est.fasta 111403684 110624897 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1889 1662
transcript 1699 1466
exon 638 370
intron 116 76
description:
protein length (aa) 479 391
exons per gene 2.66 2
# of gene models 10446


Collaborators

Pierre Gladieux, INRA, Montpellier.

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.