Info • Neurospora intermedia FGSC 2613 v1.0

Status

[April 2022] The Neurospora intermedia FGSC 2613 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 39.26
Sequencing read coverage depth 96.13x
# of contigs 21
# of scaffolds 21
# of scaffolds >= 2Kbp 21
Scaffold N50 4
Scaffold L50 (Mbp) 4.28
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.18, 5.19, 4.83


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40170 39476 98.3%
Ests est.fasta 50307107 49542885 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1827 1607
transcript 1643 1418
exon 622 349
intron 114 75
description:
protein length (aa) 456 367
exons per gene 2.64 2
# of gene models 11280


Collaborators

Vayu Maini Rekdal, University of California, Berkeley

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Maini Rekdal V, Villalobos-Escobedo JM, Rodriguez-Valeron N, Olaizola Garcia M, Prado Vásquez D, Rosales A, Sörensen PM, Baidoo EEK, Calheiros de Carvalho A, Riley R, Lipzen A, He G, Yan M, Haridas S, Daum C, Yoshinaga Y, Ng V, Grigoriev IV, Munk R, Wijaya CH, Nuraida L, Damayanti I, Cruz-Morales P, Keasling JD
Neurospora intermedia from a traditional fermented food enables waste-to-food conversion.
Nat Microbiol. 2024 Aug 29;():. doi: 10.1038/s41564-024-01799-3

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.