Status
[August 2018] The Nia vibrissa CBS 119815 genome was sequenced with Illumina technology, assembled sequentially with Velvet and AllPathsLG, and annotated with the JGI Annotation Pipeline.
Summary statistics for the Nia vibrissa v1.0 release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 26.36 |
| Sequencing read coverage depth | 186.5x |
| # of contigs | 1408 |
| # of scaffolds | 1114 |
| # of scaffolds >= 2Kbp | 848 |
| Scaffold N50 | 60 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 294 |
| % of scaffold length in gaps | 0.4% |
| Three largest Scaffolds (Mbp) | 1.62, 0.69, 0.60 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 77464 | 71755 | 92.6% |
| Ests | est.fasta | 138596511 | 134425689 | 97.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1842 | 1604 |
| transcript | 1517 | 1309 |
| exon | 244 | 147 |
| intron | 64 | 58 |
| description: | ||
| protein length (aa) | 438 | 360 |
| exons per gene | 6.22 | 5 |
| # of gene models | 10400 |
Collaborators
- Jon Magnuson, Pacific Northwest National Laboratory, WA, USA
- Joseph Spatafora, Oregon State University, OR, USA
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
