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Info • Niesslia exilis CBS 358.70 v1.0

Status

(Dec 2014) The Niesslia  exilis CBS358.70 genome was sequenced using Illumina and assembled using AllPathsLG.

Summary statistics for the Niesslia exilis CBS 358.70 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.38
Sequencing read coverage depth 85
# of contigs 74
# of scaffolds 34
# of scaffolds >= 2Kbp 30
Scaffold N50 6
Scaffold L50 (Mbp) 2.23
# of gaps 40
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 4.09, 3.31, 3.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 35859 35610 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1769 1513
transcript 1620 1388
exon 582 359
intron 86 59
description:
protein length (aa) 466 380
exons per gene 2.79 2
# of gene models 13499


Collaborators

Kathryn Bushley, University of Minnesota

Derek Johnson, Oregon State University

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.