Info • Nemania serpens AK0226 v1.0

Status

[June 2019] The Nemania serpens AK0226 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Nemania serpens AK0226 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.20
Sequencing read coverage depth 105.267682923702x
# of contigs 709
# of scaffolds 694
# of scaffolds >= 2Kbp 649
Scaffold N50 85
Scaffold L50 (Mbp) 0.15
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.70, 0.58, 0.56


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52842 51013 96.5%
Ests est.fasta 181001413 179655221 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2067 1828
transcript 1857 1626
exon 598 372
intron 102 72
description:
protein length (aa) 484 403
exons per gene 3.11 3
# of gene models 10924


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.