Info • Obelidium mucronatum JEL802 v1.0

Status

[November 2017] The Obelidium mucronatum JEL802 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Obelidium mucronatum JEL802 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.46
Sequencing read coverage depth 156.26x
# of contigs 905
# of scaffolds 905
# of scaffolds >= 2Kbp 879
Scaffold N50 68
Scaffold L50 (Mbp) 0.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.12, 0.86, 0.74


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41928 39849 95.0%
Ests est.fasta 118353712 116949445 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1714 1391
transcript 1455 1186
exon 334 212
intron 79 64
description:
protein length (aa) 438 344
exons per gene 4.36 3
# of gene models 15468


Collaborators

 

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State University, Oregon

Joyce Longcore, University of Maine, Maine

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.