Status
The genome sequence and gene prediction of Oculimacula yallundae CBS 49480 have not been determined by the Joint Genome Institute (JGI), but were downloaded from CSFG on July 31, 2022. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not automatically updated. JGI tools were used to automatically annotate predicted proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 48.66 |
| # of contigs | 494 |
| # of scaffolds | 59 |
| # of scaffolds >= 2Kbp | 28 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 2.42 |
| # of gaps | 435 |
| % of scaffold length in gaps | 0.9% |
| Three largest Scaffolds (Mbp) | 3.28, 3.04, 2.94 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1567 | 1281 |
| transcript | 1347 | 1104 |
| exon | 423 | 234 |
| intron | 102 | 59 |
| description: | ||
| protein length (aa) | 449 | 368 |
| exons per gene | 3.19 | 3 |
| # of gene models | 16587 |
Collaborators
- Adrian Tsang, Concordia University, Quebec, Canada
- Amy Powell, Sandia National Laboratories
- Donald Natvig, University of New Mexico
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Leotiomycetes Helotiales
- JGI Thermophilic fungi group
Funding
This project was not sequenced at the JGI.
