Info • Oliveonia pauxilla MPI-PUGE-AT-0066 v1.0

Status

[November 2017] The Oliveonia pauxilla MPI-PUGE-AT-0066 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Oliveonia pauxilla v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.73
Sequencing read coverage depth 39.85x
# of contigs 919
# of scaffolds 919
# of scaffolds >= 2Kbp 903
Scaffold N50 45
Scaffold L50 (Mbp) 0.22
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.76, 1.55, 1.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54500 50355 92.4%
Ests est.fasta 123296586 115582164 93.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1816 1566
transcript 1509 1312
exon 265 157
intron 67 56
description:
protein length (aa) 437 359
exons per gene 5.69 5
# of gene models 14601


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.