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Info • Onnia scaura P-53A v1.0


Assembly v1 (April 2015) is a standard draft assembly, using Illumina gDNAs assembled with AllPathsLG.

Summary statistics for the Onnia scaura P-53A v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.10
Sequencing read coverage depth 88.8x
# of contigs 2066
# of scaffolds 834
# of scaffolds >= 2Kbp 683
Scaffold N50 95
Scaffold L50 (Mbp) 0.12
# of gaps 1232
% of scaffold length in gaps 4.7%
Three largest Scaffolds (Mbp) 0.61, 0.52, 0.45

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 42161 40219 95.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1646 1357
transcript 1341 1084
exon 252 152
intron 73 60
protein length (aa) 382 297
exons per gene 5.33 4
# of gene models 12895


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.