Info • Ophiocordyceps camponoti-rufipedis Map16

Status

The genome sequence and gene models of Ophiocordyceps camponoti-rufipedis Map16 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 21.90
Sequencing read coverage depth
# of contigs 2230
# of scaffolds 2205
# of scaffolds >= 2Kbp 1535
Scaffold N50 279
Scaffold L50 (Mbp) 0.02
# of gaps 25
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.15, 0.11, 0.11


Gene Models ExternalModels
length (bp) of: average median
gene 1651 1350
transcript 1476 1200
exon 523 273
intron 98 62
description:
protein length (aa) 492 400
exons per gene 2.82 2
# of gene models 7618


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

de Bekker C, Ohm RA, Evans HC, Brachmann A, Hughes DP
Ant-infecting Ophiocordyceps genomes reveal a high diversity of potential behavioral manipulation genes and a possible major role for enterotoxins.
Sci Rep. 2017 Oct 2;7(1):12508. doi: 10.1038/s41598-017-12863-w

Funding

This project was not sequenced at the JGI.