Status
The genome of Ophiostoma novo-ulmi subspecies novo-ulmi strain H327 was sequenced across five genomic core facilities, as part of a study by the DNA Sequencing Research Group (DSRG) of the Association of Biomolecular Resource Facilities (ABRF). The data was provided to JGI by Louis Bernier and were imported into MycoCosm in order to allow comparative analyses with other fungi.
Summary statistics for the Ophiostoma novo-ulmi subsp.
novo-ulmi H327 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 31.78 |
| Sequencing read coverage depth | 61x |
| # of contigs | 158 |
| # of scaffolds | 8 |
| # of scaffolds >= 2Kbp | 8 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 3.67 |
| # of gaps | 150 |
| % of scaffold length in gaps | 0.3% |
| Three largest Scaffolds (Mbp) | 6.94, 6.82, 3.67 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1786 | 1497 |
| transcript | 1667 | 1401 |
| exon | 817 | 439 |
| intron | 116 | 67 |
| description: | ||
| protein length (aa) | 556 | 467 |
| exons per gene | 2.04 | 2 |
| # of gene models | 8640 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Forgetta V, Leveque G, Dias J, Grove D, Lyons R Jr, Genik S, Wright C, Singh S, Peterson N, Zianni M, Kieleczawa J, Steen R, Perera A, Bintzler D, Adams S, Hintz W, Jacobi V, Bernier L, Levesque R, Dewar K
Sequencing of the Dutch elm disease fungus genome using the Roche/454 GS-FLX Titanium System in a comparison of multiple genomics core facilities.
J Biomol Tech. 2013 Apr;24(1):39-49. doi: 10.7171/jbt.12-2401-005
Comeau AM, Dufour J, Bouvet GF, Jacobi V, Nigg M, Henrissat B, Laroche J, Levesque RC, Bernier L
Functional annotation of the Ophiostoma novo-ulmi genome: insights into the phytopathogenicity of the fungal agent of Dutch elm disease.
Genome Biol Evol. 2014 Dec 24;7(2):410-30. doi: 10.1093/gbe/evu281
Forgetta V, Leveque G, Dias J, Grove D, Lyons R Jr, Genik S, Wright C, Singh S, Peterson N, Zianni M, Kieleczawa J, Steen R, Perera A, Bintzler D, Adams S, Hintz W, Jacobi V, Bernier L, Levesque R, Dewar K
Sequencing of the Dutch elm disease fungus genome using the Roche/454 GS-FLX Titanium System in a comparison of multiple genomics core facilities.
J Biomol Tech. 2013 Apr;24(1):39-49. doi: 10.7171/jbt.12-2401-005
Comeau AM, Dufour J, Bouvet GF, Jacobi V, Nigg M, Henrissat B, Laroche J, Levesque RC, Bernier L
Functional annotation of the Ophiostoma novo-ulmi genome: insights into the phytopathogenicity of the fungal agent of Dutch elm disease.
Genome Biol Evol. 2014 Dec 24;7(2):410-30. doi: 10.1093/gbe/evu281
Funding
This project was not sequenced at the JGI.
