Status
This genome was sequenced by Sajeet Haridas, Ye Wang et al in Department of Wood Science, University of British Columbia, Vancouver, BC V6T1Z4, Canada (The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera). Please check their data use policies.
Summary statistics for the Ophiostoma piceae UAMH 11346
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.84 |
| Sequencing read coverage depth | 735x |
| # of contigs | 343 |
| # of scaffolds | 45 |
| # of scaffolds >= 2Kbp | 45 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.45 |
| # of gaps | 298 |
| % of scaffold length in gaps | 1.0% |
| Three largest Scaffolds (Mbp) | 4.38, 2.92, 2.06 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1829 | 1535 |
| transcript | 1675 | 1407 |
| exon | 741 | 380 |
| intron | 124 | 72 |
| description: | ||
| protein length (aa) | 558 | 469 |
| exons per gene | 2.26 | 2 |
| # of gene models | 8884 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Haridas S, Wang Y, Lim L, Massoumi Alamouti S, Jackman S, Docking R, Robertson G, Birol I, Bohlmann J, Breuil C
The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera.
BMC Genomics. 2013 Jun 2;14():373. doi: 10.1186/1471-2164-14-373
Haridas S, Wang Y, Lim L, Massoumi Alamouti S, Jackman S, Docking R, Robertson G, Birol I, Bohlmann J, Breuil C
The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera.
BMC Genomics. 2013 Jun 2;14():373. doi: 10.1186/1471-2164-14-373
Funding
This project was not sequenced at the JGI.
