Info • Ophiostoma piliferum

Status

The genome of Ophiostoma piliferum was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora (spatafoj@science.oregonstate.edu). JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Ophiostoma piliferum genome v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.26
Sequencing read coverage depth 25.90x
# of contigs 7644
# of scaffolds 3462
# of scaffolds >= 2Kbp 1697
Scaffold N50 244
Scaffold L50 (Mbp) 0.03
# of gaps 4182
% of scaffold length in gaps 2.6%
Three largest Scaffolds (Mbp) 0.24, 0.18, 0.18


Gene Models ExternalModels
length (bp) of: average median
gene 1527 1200
transcript 1384 1074
exon 617 347
intron 117 70
description:
protein length (aa) 461 358
exons per gene 2.24 2
# of gene models 8564


Collaborators

PI: Joey Spatafora, Oregon State University

Funding

This project was not sequenced at the JGI.