Status
The genome of Ophiostoma piliferum was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Ophiostoma piliferum genome
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.26 |
| Sequencing read coverage depth | 25.90x |
| # of contigs | 7644 |
| # of scaffolds | 3462 |
| # of scaffolds >= 2Kbp | 1697 |
| Scaffold N50 | 244 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 4182 |
| % of scaffold length in gaps | 2.6% |
| Three largest Scaffolds (Mbp) | 0.24, 0.18, 0.18 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1527 | 1200 |
| transcript | 1384 | 1074 |
| exon | 617 | 347 |
| intron | 117 | 70 |
| description: | ||
| protein length (aa) | 461 | 358 |
| exons per gene | 2.24 | 2 |
| # of gene models | 8564 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.
