Info • Ophiostoma piceae CECT20416 v2.0

Status

 

 

The genome sequence and gene models of Ophiostoma piceae CECT20416 v2.0 were not determined by the Joint Genome Institute (JGI), but were provided by Jorge Barriuso in July 2021 from data produced by Novogene Co, Ltd. The genome was sequenced with Illumina, assembled by VelvetOptimiser (version 2.5.5), and annotated by Augustus (version 3.4.0).

In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the JGI and is therefore not automatically updated.



Genome Assembly
Genome Assembly size (Mbp) 32.08
Sequencing read coverage depth
# of contigs 231
# of scaffolds 88
# of scaffolds >= 2Kbp 25
Scaffold N50 3
Scaffold L50 (Mbp) 4.45
# of gaps 143
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.11, 6.39, 4.45


Gene Models ExternalModels
length (bp) of: average median
gene 1827 1533
transcript 1691 1425
exon 799 432
intron 124 61
description:
protein length (aa) 564 475
exons per gene 2.11 2
# of gene models 8857


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Santos-Pascual R, Campoy I, Sanz Mata D, Martínez MJ, Prieto A, Barriuso J
Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae.
Microbiol Spectr. 2023 Oct 5;():e0029023. doi: 10.1128/spectrum.00290-23

Funding

This project was not sequenced at the JGI.