Status
The genome sequence and gene models of Ophiocordyceps kimflemingae SC16a were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 23.91 |
| Sequencing read coverage depth | |
| # of contigs | 3535 |
| # of scaffolds | 2536 |
| # of scaffolds >= 2Kbp | 1383 |
| Scaffold N50 | 251 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 999 |
| % of scaffold length in gaps | 0.7% |
| Three largest Scaffolds (Mbp) | 0.17, 0.13, 0.12 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1578 | 1300 |
| transcript | 1421 | 1158 |
| exon | 472 | 220 |
| intron | 80 | 64 |
| description: | ||
| protein length (aa) | 474 | 386 |
| exons per gene | 3.01 | 3 |
| # of gene models | 8577 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
de Bekker C, Ohm RA, Loreto RG, Sebastian A, Albert I, Merrow M, Brachmann A, Hughes DP
Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation.
BMC Genomics. 2015 Aug 19;16():620. doi: 10.1186/s12864-015-1812-x
de Bekker C, Ohm RA, Loreto RG, Sebastian A, Albert I, Merrow M, Brachmann A, Hughes DP
Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation.
BMC Genomics. 2015 Aug 19;16():620. doi: 10.1186/s12864-015-1812-x
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
Funding
This project was not sequenced at the JGI.
