Info • Panaeolus papilionaceus CIRM-BRFM 715 v1.0

Status

[February 2017] The Panaeolus papilionaceus CIRM-BRFM 715 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Panaeolus papilionaceus CIRM-BRFM 715 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.89
Sequencing read coverage depth 79.85x
# of contigs 79
# of scaffolds 79
# of scaffolds >= 2Kbp 77
Scaffold N50 11
Scaffold L50 (Mbp) 1.82
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.44, 2.95, 2.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 104443 102628 98.3%
Ests est.fasta 183610594 182979305 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1700 1447
transcript 1380 1167
exon 253 156
intron 74 60
description:
protein length (aa) 401 329
exons per gene 5.46 4
# of gene models 17466


Collaborators

José María Barrasa, Universidad de Alcalá, Spain

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.