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Info • Panellus stipticus KUC8834 v1.1

Status

Aug 2014. The Panellus stipticus KUC8140 genome was sequenced using the Illumina platform and subsequently assembled with AllPathsLG release version R44008 (Gnerre et al., 2010) to produce an assembly that was used as input to PBJelly for PacBio patching. The genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Panellus stipticus KUC8834 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.17
Sequencing read coverage depth 112.2x
# of contigs 3730
# of scaffolds 1562
# of scaffolds >= 2Kbp 1300
Scaffold N50 181
Scaffold L50 (Mbp) 0.08
# of gaps 2168
% of scaffold length in gaps 32.0%
Three largest Scaffolds (Mbp) 0.59, 0.54, 0.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 48569 43879 90.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1601 1323
transcript 1299 1083
exon 228 141
intron 66 54
description:
protein length (aa) 384 313
exons per gene 5.70 4
# of gene models 15860


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.