Info • Paraphoma chrysanthemicola MPI-GEGE-AT-0034 v1.0

Status

[November 2017] The Paraphoma chrysanthemicola MPI-GEGE-AT-0034 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Paraphoma chrysanthemicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.66
Sequencing read coverage depth 199.2x
# of contigs 34
# of scaffolds 34
# of scaffolds >= 2Kbp 34
Scaffold N50 9
Scaffold L50 (Mbp) 1.78
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.89, 2.76, 2.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34966 33440 95.6%
Ests est.fasta 151273231 149158651 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1786 1572
transcript 1656 1459
exon 607 392
intron 77 55
description:
protein length (aa) 470 398
exons per gene 2.73 2
# of gene models 15089


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.