Info • Paraglomus occultum DAOM 240472


The Paraglomus occultum genome sequence and gene models have not been determined by the JGI, but were received from the laboratory of Nicolas Corradi at University of Ottawa on March 05, 2024. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 860 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All of the original published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by the Corradi lab and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 44.93
Sequencing read coverage depth
# of contigs 4744
# of scaffolds 4722
# of scaffolds >= 2Kbp 4712
Scaffold N50 806
Scaffold L50 (Mbp) 0.02
# of gaps 22
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.10, 0.09, 0.08

Gene Models FilteredModels1
length (bp) of: average median
gene 1769 1448
transcript 1312 1055
exon 257 149
intron 113 85
protein length (aa) 437 351
exons per gene 5.10 4
# of gene models 9286

Genome Reference(s)



This project was not sequenced at the JGI.