Status
[Feb 2016] The Parasitella parasitica NRRL 2501 genome was sequenced using the Illumina platform and assembled together with AllPathsLG release version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Parasitella parasitica NRRL
2501 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.77 |
| Sequencing read coverage depth | 91x |
| # of contigs | 1555 |
| # of scaffolds | 450 |
| # of scaffolds >= 2Kbp | 348 |
| Scaffold N50 | 54 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 1105 |
| % of scaffold length in gaps | 4.1% |
| Three largest Scaffolds (Mbp) | 0.58, 0.51, 0.49 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 30798 | 29491 | 95.8% |
| Ests | est.fasta | 93327640 | 91847214 | 98.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1542 | 1280 |
| transcript | 1339 | 1096 |
| exon | 354 | 204 |
| intron | 75 | 62 |
| description: | ||
| protein length (aa) | 396 | 316 |
| exons per gene | 3.79 | 3 |
| # of gene models | 12306 |
Collaborators
Jason Stajich, UC Riverside, California
Joey Spatafora, Oregon State, Oregon
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, Tritt A, Keymanesh K, Yan M, Barry K, Grigoriev IV, Spatafora JW, Stajich JE
Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors.
Genome Biol Evol. 2023 Mar 17;():. doi: 10.1093/gbe/evad046
Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, Tritt A, Keymanesh K, Yan M, Barry K, Grigoriev IV, Spatafora JW, Stajich JE
Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors.
Genome Biol Evol. 2023 Mar 17;():. doi: 10.1093/gbe/evad046
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
