Info • Paraphysoderma sedebokerense JEL821 v1.0

Status

[September 2017] The Paraphysoderma sedebokerense JEL821 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Paraphysoderma sedebokerense JEL821 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.88
Sequencing read coverage depth 243.34
# of contigs 379
# of scaffolds 379
# of scaffolds >= 2Kbp 296
Scaffold N50 31
Scaffold L50 (Mbp) 0.24
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.95, 0.85, 0.81


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 93066 76439 82.1%
Ests est.fasta 134873774 126691981 93.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1851 1582
transcript 1488 1265
exon 287 179
intron 89 74
description:
protein length (aa) 419 335
exons per gene 5.18 4
# of gene models 10859


Collaborators

Tim James, University of Michigan, USA
Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.