Info • Paxillus ammoniavirescens Pou09.2 v1.0

Status

Assembly v1 (April 2015) is a minimal draft assembly, using Illumina gDNAs assembled successively with Velvet and AllPathsLG.

Summary statistics for the Paxillus ammoniavirescens Pou09.2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.76
Sequencing read coverage depth 176.5x
# of contigs 2244
# of scaffolds 1194
# of scaffolds >= 2Kbp 992
Scaffold N50 84
Scaffold L50 (Mbp) 0.09
# of gaps 1050
% of scaffold length in gaps 2.8%
Three largest Scaffolds (Mbp) 1.22, 0.76, 0.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 44234 42408 95.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1666 1388
transcript 1356 1113
exon 239 150
intron 68 57
description:
protein length (aa) 389 309
exons per gene 5.68 4
# of gene models 13473


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.