Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Paxillus involutus ATCC 200175 v1.0

Status

Assembly v1 (March 2011) is a draft assembly of 454 and Sanger gDNA reads, and shredded Velvet contigs. The latter were assembled from Solexa gDNA reads. A total of 2681 scaffolds and 58.3 Mbp were assembled using Newbler.

Summary statistics for the Paxillus involutus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 58.30
Sequencing read coverage depth 36.20x
# of contigs 6222
# of scaffolds 2681
# of scaffolds >= 2Kbp 2681
Scaffold N50 29
Scaffold L50 (Mbp) 0.38
# of gaps 3541
% of scaffold length in gaps 15.7%
Three largest Scaffolds (Mbp) 2.81, 2.28, 2.23


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests 454 ESTs from MNM culture 1016852 841990 82.8%
Ests Sanger ESTs from Lund University 13015 8047 61.8%
Ests 454 ESTs from SOM culture 1098019 965502 87.9%
Other EST Newbler contigs 14254 9761 68.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1527 1163
transcript 1152 918
exon 231 150
intron 96 57
description:
protein length (aa) 356 278
exons per gene 4.99 4
# of gene models 17968


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.