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Info • Paxillus rubicundulus Ve08.2h10 v1.0
Please note that this organism is for archival use only. Please see the current Paxillus adelphus Ve08.2h10 v2.0 site for the latest data and information.

Status

Assembly v1 (July 2012) is a draft assembly of Solexa gDNA reads. A total of 6945 scaffolds and 53.0 Mbp were assembled using AllPathsLG.

Summary statistics for the Paxillus rubicundulus Ve08.2h10 v1.0 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 53.01
Sequencing read coverage depth 133.9x
# of contigs 7170
# of scaffolds 6945
# of scaffolds >= 2Kbp 5259
Scaffold N50 847
Scaffold L50 (Mbp) 0.01
# of gaps 225
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.24, 0.14, 0.12


RNAs Data set # sequences total # mapped to genome % mapped to genome
Contigs JGI_Combest_RNA_contigs 152518 132597 86.9%
Contigs JGI_Rnnotator_RNA_contigs 40122 35008 87.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1124 748
transcript 924 618
exon 242 162
intron 73 57
description:
protein length (aa) 264 160
exons per gene 3.81 2
# of gene models 22065


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.