Info • Paxillus adelphus Ve08.2h10 v2.0

Status

Assembly v2 (January 2013) is an improved draft assembly of Solexa gDNA reads. A total of 1671 scaffolds and 64.5 Mbp were assembled using AllPathsLG.

Summary statistics for the Paxillus adelphus Ve08.2h10 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 64.46
Sequencing read coverage depth 79.7x
# of contigs 4331
# of scaffolds 1671
# of scaffolds >= 2Kbp 1335
Scaffold N50 165
Scaffold L50 (Mbp) 0.11
# of gaps 2660
% of scaffold length in gaps 5.5%
Three largest Scaffolds (Mbp) 0.59, 0.52, 0.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 40122 38109 95.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1309 961
transcript 1063 765
exon 238 157
intron 73 57
description:
protein length (aa) 311 211
exons per gene 4.47 3
# of gene models 18999


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.