Info • Penicillium bialowiezense ITEM 18534 v1.0

Status

[June 2022] The Penicillium bialowiezense ITEM 18534 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 31.18
Sequencing read coverage depth 192.62x
# of contigs 185
# of scaffolds 166
# of scaffolds >= 2Kbp 119
Scaffold N50 5
Scaffold L50 (Mbp) 2.89
# of gaps 19
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.57, 3.40, 3.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48697 46720 95.9%
Ests est.fasta 187231744 185505542 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1952 1715
transcript 1802 1579
exon 577 347
intron 73 58
description:
protein length (aa) 482 402
exons per gene 3.12 3
# of gene models 12008


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.