Info • Penicillium brevicompactum ITEM 18316 v1.0

Status

[June 2022] The Penicillium brevicompactum ITEM 18316 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 31.00
Sequencing read coverage depth 191.88x
# of contigs 165
# of scaffolds 156
# of scaffolds >= 2Kbp 122
Scaffold N50 6
Scaffold L50 (Mbp) 2.82
# of gaps 9
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.29, 3.22, 3.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45422 43782 96.4%
Ests est.fasta 134901202 133001540 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1956 1705
transcript 1798 1566
exon 574 347
intron 76 58
description:
protein length (aa) 483 399
exons per gene 3.13 3
# of gene models 11719


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.