Info • Phyllosticta citricarpa CBS 111.20 v1.0

Status

[June 2020] The Phyllosticta citricarpa CBS 111.20 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citricarpa CBS 111.20 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.85
Sequencing read coverage depth 24.64x
# of contigs 113
# of scaffolds 113
# of scaffolds >= 2Kbp 109
Scaffold N50 20
Scaffold L50 (Mbp) 0.53
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.11, 1.09, 1.02


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35897 33550 93.5%
Ests est.fasta 170884559 166752605 97.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1810 1561
transcript 1648 1399
exon 571 356
intron 88 58
description:
protein length (aa) 469 382
exons per gene 2.89 3
# of gene models 10148


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.