Info • Phyllosticta citricarpa CBS 122670 v1.0

Status

[June 2020] The Phyllosticta citricarpa CBS 122670 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citricarpa CBS 122670 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.43
Sequencing read coverage depth 69.86x
# of contigs 95
# of scaffolds 95
# of scaffolds >= 2Kbp 91
Scaffold N50 18
Scaffold L50 (Mbp) 0.56
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.33, 1.29, 1.21


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36350 34199 94.1%
Ests est.fasta 158395984 155915163 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1814 1570
transcript 1654 1403
exon 577 361
intron 88 58
description:
protein length (aa) 469 380
exons per gene 2.86 3
# of gene models 10297


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.