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Info • Phyllosticta citricarpa CBS 131864 v1.0

Status

[July 2020] The Phyllosticta citricarpa CBS 131864 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citricarpa CBS 131864 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.49
Sequencing read coverage depth 65.48x
# of contigs 92
# of scaffolds 92
# of scaffolds >= 2Kbp 89
Scaffold N50 19
Scaffold L50 (Mbp) 0.56
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.48, 1.16, 1.04


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40642 38526 94.8%
Ests est.fasta 209086145 205641478 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1798 1559
transcript 1646 1406
exon 574 358
intron 84 58
description:
protein length (aa) 468 381
exons per gene 2.87 3
# of gene models 10219


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.