Info • Phyllosticta citricarpa CBS 141352 v1.0

Status

[June 2020] The Phyllosticta citricarpa CBS 141352 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citricarpa CBS 141352 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.43
Sequencing read coverage depth 31.86x
# of contigs 130
# of scaffolds 130
# of scaffolds >= 2Kbp 123
Scaffold N50 22
Scaffold L50 (Mbp) 0.49
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.15, 1.10, 0.95


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38249 36347 95.0%
Ests est.fasta 165291906 163608120 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1823 1578
transcript 1655 1415
exon 569 353
intron 90 58
description:
protein length (aa) 472 385
exons per gene 2.91 3
# of gene models 10176


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.