Info • Phyllosticta citriasiana CBS 120426 v2.0

Status

[June 2020] The Phyllosticta citriasiana CBS 120426 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citriasiana CBS 120426 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.77
Sequencing read coverage depth 345.16x
# of contigs 30
# of scaffolds 30
# of scaffolds >= 2Kbp 30
Scaffold N50 7
Scaffold L50 (Mbp) 2.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.09, 2.85, 2.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33314 30352 91.1%
Ests est.fasta 130573874 128007845 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1802 1550
transcript 1651 1396
exon 576 362
intron 83 57
description:
protein length (aa) 467 381
exons per gene 2.86 2
# of gene models 10291


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

van Ingen-Buijs VA, van Westerhoven AC, Skiadas P, Zuijdgeest XCL, Haridas S, Daum C, Duffy K, Guo J, Hundley H, LaButti K, Lipzen A, Pangilinan J, Riley R, Wang J, Yan M, Martin F, Barry K, Grigoriev IV, Groenewald JZ, Crous PW, Seidl MF
Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. Citricarpa based on phylogenomic analyses.
Fungal Genet Biol. 2024 Sep 5;():103925. doi: 10.1016/j.fgb.2024.103925

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.