Info • Penicillium crustosum ITEM 16721 v1.0

Status

[June 2022] The Penicillium crustosum ITEM 16721 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 31.19
Sequencing read coverage depth 192.43x
# of contigs 125
# of scaffolds 112
# of scaffolds >= 2Kbp 101
Scaffold N50 11
Scaffold L50 (Mbp) 0.96
# of gaps 13
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.11, 1.87, 1.69


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 37363 36849 98.6%
Ests est.fasta 108282457 107500720 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2013 1747
transcript 1836 1590
exon 567 340
intron 81 61
description:
protein length (aa) 499 416
exons per gene 3.24 3
# of gene models 11506


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.