Status
The genome sequence and gene models for Pecoramyces sp. F1 were not determined by the Joint Genome Institute (JGI), but were provided by Yanfen Cheng (Li et al., 2019) on April 19, 2021. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 106.83 |
| Sequencing read coverage depth | |
| # of contigs | 16219 |
| # of scaffolds | 10442 |
| # of scaffolds >= 2Kbp | 5688 |
| Scaffold N50 | 762 |
| Scaffold L50 (Mbp) | 0.04 |
| # of gaps | 5777 |
| % of scaffold length in gaps | 7.5% |
| Three largest Scaffolds (Mbp) | 0.27, 0.27, 0.25 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1918 | 1431 |
| transcript | 1418 | 1029 |
| exon | 375 | 152 |
| intron | 182 | 151 |
| description: | ||
| protein length (aa) | 473 | 343 |
| exons per gene | 3.78 | 3 |
| # of gene models | 17740 |
Collaborators
Yanfen Cheng, Nanjing Agricultural University, Nanjing, China
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Li Y, Li Y, Jin W, Sharpton TJ, Mackie RI, Cann I, Cheng Y, Zhu W
Combined Genomic, Transcriptomic, Proteomic, and Physiological Characterization of the Growth of Pecoramyces sp. F1 in Monoculture and Co-culture With a Syntrophic Methanogen.
Front Microbiol. 2019;10():435. doi: 10.3389/fmicb.2019.00435
Li Y, Li Y, Jin W, Sharpton TJ, Mackie RI, Cann I, Cheng Y, Zhu W
Combined Genomic, Transcriptomic, Proteomic, and Physiological Characterization of the Growth of Pecoramyces sp. F1 in Monoculture and Co-culture With a Syntrophic Methanogen.
Front Microbiol. 2019;10():435. doi: 10.3389/fmicb.2019.00435
Links
- JGI PhyloGroup Portals: Fungi Chytridiomycota Neocallimastigomycetes
Funding
This project was not sequenced at the JGI.
