Info • Penicillium brevicompactum 1011305 v2.0


June 2013. The Penicillium brevicompactum genome was sequenced using Illumina technology and assembled using AllPathsLG version R44849. Subsequently it was annotated using the JGI annotation pipeline and custom analyses.

Summary statistics for the Penicillium brevicompactum v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.11
Sequencing read coverage depth 99.6x
# of contigs 96
# of scaffolds 35
# of scaffolds >= 2Kbp 33
Scaffold N50 3
Scaffold L50 (Mbp) 5.10
# of gaps 61
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 6.51, 6.14, 5.10

Gene Models FilteredModels1
length (bp) of: average median
gene 1610 1356
transcript 1443 1215
exon 467 250
intron 82 59
protein length (aa) 481 405
exons per gene 3.09 3
# of gene models 11536


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.