Status
June 2013. The Penicillium brevicompactum genome was sequenced using Illumina technology and assembled using AllPathsLG version R44849. Subsequently it was annotated using the JGI annotation pipeline and custom analyses.
Summary statistics for the Penicillium brevicompactum v2.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.11 |
| Sequencing read coverage depth | 99.6x |
| # of contigs | 96 |
| # of scaffolds | 35 |
| # of scaffolds >= 2Kbp | 33 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 5.10 |
| # of gaps | 61 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 6.51, 6.14, 5.10 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1610 | 1356 |
| transcript | 1443 | 1215 |
| exon | 467 | 250 |
| intron | 82 | 59 |
| description: | ||
| protein length (aa) | 481 | 405 |
| exons per gene | 3.09 | 3 |
| # of gene models | 11536 |
Collaborators
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
