Info • Penicillium canescens ATCC 10419 v1.0

Status

The Penicillium canescens genome was sequenced using Illumina technology and assembled with with AllPathsLG version R44849. Subsequently the genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Penicillium canescens ATCC 10419 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.26
Sequencing read coverage depth 97x
# of contigs 248
# of scaffolds 62
# of scaffolds >= 2Kbp 56
Scaffold N50 5
Scaffold L50 (Mbp) 2.75
# of gaps 186
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 5.68, 4.18, 3.43


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters CombestEstClusters 38423 38210 99.4%
Other EST_assemblies 17607 15610 88.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1774 1549
transcript 1613 1399
exon 518 306
intron 78 59
description:
protein length (aa) 467 395
exons per gene 3.12 3
# of gene models 12374


Collaborators

Dave Greenshields, Novozymes

Keith Seifert, Agriculture and Agri-Food Canada

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.